Author's note: The following consists of excerpts from my    45-page May 30 report on bluebird bio (NASDAQ:BLUE), Kite Pharma (NASDAQ:KITE), and Juno Therapeutics (NASDAQ:JUNO). The focus in this submission is    BLUE. Please check out my Seeking Alpha profile for important    information.    Global Gene Therapy Market  
    The gene therapy market is gaining popularity in the global    medical community. The advent of advanced techniques for gene    transfer has enabled the use of gene therapy for various new    applications. Although it is still at an infant stage, its    promise has led to a range of bullish estimates. Market    research firm BCC Research forecasts the global market for DNA    vaccines to grow at a 54.8% CAGR to $2.7 bln by 2019, while two other    observers - Roots Analysis and Research and Markets - predict    the gene therapy market as a whole to reach ~$11 bln by 2025.    Another report from market intelligence firm Transparency    Market Research forecasts that the global stem cell market will    grow at a CAGR of > 20% in the next few years and said there    is a rich pipeline of more than 500 cell and gene therapy    products, which will drive significant capacity as the pipeline    matures and progresses to commercial supply.  
    Key factors driving market growth include demand for novel    and efficient therapies to treat cancers and other indications    with high unmet needs. Other market drivers include    completion of the human genome project, rising incidence and    prevalence of cancers and other critical diseases, and the    prospective launch of gene therapies in major global markets.  
    Most gene therapy products are in the pre-clinical or    clinical research stage. To-date, there are only five    marketed drugs, namely Glybera, Neovasculogen, Gendicine,    Rexin-G, and Oncorine. However, these products constitute very    little revenue for the gene therapy market. Most    revenue for the gene therapy market is generated from products    used in clinical trials.  
    Need for gene therapy: It is estimated that    approximately 5% of the global population suffers from a rare    disease, and half of the global population affected by rare    diseases are children, making rare disease treatment a concern    for children across the globe. There are about 7,000 known rare    diseases that comprise the most complex healthcare challenges    for researchers and health professionals - with most being    difficult to diagnose due to heterogeneity in disease    epidemiology.  
    Rare diseases that affect 200,000 people in the US (as    per the FDA definition) and a similar percentage in Europe are    typically genetic in nature and, thus, present a significant    unmet need for potential regimes in the market.  
    As per World Health Organization, 80% of rare diseases are    caused due to genetic abnormality and are inherited for    generations. Approximately 5% of the rare diseases have a    treatment, and most of the current therapeutic approaches    include gene therapy and cell therapy. A significant gap    between demand and supply of rare disease drugs is expected to    create a massive opportunity for manufacturers and researchers    in the area of rare disease treatment.  
    How Does Gene Therapy Work?  
    Advances in biotechnology have brought gene therapy to the    forefront of medical research. The prelude to successful gene    therapy, the efficient transfer and expression of a variety of    human gene into target cells, has already been accomplished in    several systems.  
    Gene therapy may be defined as the introduction of genetic    material into defective cells for a therapeutic purpose. While    gene therapy holds great potential as an effective means for    selective targeting and treatment of disease, the field has    seen relatively slow progress in the development of effective    clinical protocols. Although identifying genetic factors that    cause a physiological defect is straightforward, successful    targeted correction techniques are proving continually elusive.    Hence, safe methods have been devised to do this (using several    viral and no-viral vectors). Two main approaches have emerged     in-vivo modification and ex-vivo modification. Retrovirus,    adenovirus, adeno-associated virus are suitable for gene    therapeutic approaches; these are based on permanent expression    of the therapeutic gene. Non-viral vectors are far less    efficient than viral vectors, but they have advantages due to    their low immunogenicity and large capacity for therapeutic    DNA.  
    Viral Vectors: These are virus-based vectors. Examples    include retrovirus vector, adeno virus vector system, adeno    associated virus vector, and herpes simplex virus. Extensive    research is being conducted on the various viral vectors used    in gene delivery. Non-viral vectors: Examples of non-viral    vector systems include pure DNA constructs, lipoplexes, DNA    molecular conjugates, and human artificial chromosomes. Owing    to the following advantages, non-viral vectors have gained    significant importance in the past few years as they are less    immune-toxic, there is risk-free repeat administration and    relative ease of large-scale production.  
    A major disadvantage is that the corrected gene needs to be    unloaded into the target cell, and the vector has to be made to    reach the required treatment site.  
    Gene therapy has transitioned from the conceptual,    technology-driven, laboratory research, to clinical trial    stages for a wide variety of diseases. In addition to curing    genetic disorders such as Hemophilia, Chronic Granulomatous    Disorder, and Severe Combined Immune Deficiency (ADA-SCID), it    is also being tested to cure acquired diseases such as cancer,    neurodegenerative diseases, influenza, and hepatitis.  
    Gene therapy is not limited to any particular disease. It is    proving to be a promising treatment for rare diseases such as    X-linked adrenoleukodystrophy. The therapy has proved effective    in research conducted for the following diseases:  
    Fat Metabolism Disorder: Gene therapy is used to    correct rare genetic diseases caused due to lipoprotein lipase    deficiency. This deficiency leads to fat molecules clogging the    bloodstream. An adeno-associated virus vector is used to    deliver the corrected copy of the LPL to the muscle cells. This    corrected copy prevents excess accumulation of fat in the blood    by breaking down the fat molecules. In 2012, the EU approved    Glybera, the first viral gene therapy treatment for LPLD,    manufactured by uniQure (NASDAQ:QURE). Glybera is likely to be approved for    the American market by 2018.  
    Adenosine Deaminase Deficiency: Gene therapy has    successfully been used to treat another inherited immune    disorder - ADA deficiency. More importantly, none of the    patients undergoing this treatment developed any other    disorder. The retroviral vector is used in multiple small    trials to deliver the functional copy of the ADA gene.    Primarily, all the patients involved in these trials did not    require any injection of ADA enzyme as their immune functions    had immensely improved.  
    Severe Combined Immune Deficiency: A lot of documented    work is already available regarding treating this    immunodeficiency with gene therapy; however, clinical trials    have not shown promising results. The viral vectors used during    the trials triggered leukemia in patients. Since then, focus of    the research and trials has been on preparing new vectors that    are safe and do not cause cancer.  
    Hemophilia: Patients with hemophilia suffer excessive    blood loss as the blood clotting protein (Factor IX) is absent.    Researchers have successfully inserted the missing gene in the    liver cells using an adeno-associated viral vector. After    undergoing this treatment, patients experienced less bleeding    as their body was able to create some of the Factor IX protein.  
    Cystic Fibrosis (CF): CF is a chronic lung disease    caused due to a faulty CFTR gene. Genes are injected into cells    using a virus. Recent studies also include testing the cationic    liposome (a fatty container) to deliver DNA to the faulty CFTR    gene, thus making the use of the non-viral gene carrier more    successful. Phase II trials using this therapy were published    in early 2015, which promised a novel therapeutic approach to    CF.  
    -thalassemia: Clinical trials on gene therapy for    -thalassemia (the faulty beta-globin gene, which codes for an    oxygen-carrying protein in RBC) can be tracked back to 2007.    Blood stem cells were taken from the patients bone marrow, and    a retrovirus was used to transfer a working copy of the faulty    gene. The modified stem cells were re-injected into the body to    supply functional red blood cells. This treatment, once    conducted, lasted over seven years, with the patient not    undergoing blood transfusion during this time.  
    Hereditary Blindness: Currently, gene therapy is being    tested to treat degenerative form of inherited blindness, where    patients lose light-sensing cells in their eyes over time.    Experimental data suggests that the animal models of a mouse,    rat, and dog show slow or even reverse vision loss using gene    therapy. The most important advantage associated with gene    therapy for eye disorders is that AAV (adeno-associated virus)    cannot shift from the eye to other body parts and hence does    not cause an immune reaction.  
    Parkinson's Disease: Patients with Parkinson's disease    lose the ability to control their movement as their brain cells    stop producing the dopamine molecule used for signaling. A    small group of patients showed improved muscle control when a    small area of their brain was treated with a retroviral vector    that contained dopamine-producing genes.  
    This is because cancer genetics is a novel treatment method,    marked by high R&D costs. The therapy targets diseases with    high unmet needs; this has been the driving force behind    academic research laboratories, small biotech firms, and large    pharmaceutical companies. The therapy is of short-duration    treatment or mostly one-time treatment customized to    individuals and often in small patient populations.  
    bluebird bio (BLUE) is a clinical-stage    biotechnology company that focuses on developing transformative    gene therapies for severe genetic diseases and cancer. Its    product candidates include Lenti-D, which is in Phase II/III    clinical studies for the treatment of cerebral    adrenoleukodystrophy - a rare hereditary neurological disorder    - and LentiGlobin, which is in four clinical studies for the    treatment of transfusion-dependent beta-thalassemia and severe    sickle cell disease. The companys lead product candidate is    bb2121, a chimeric antigen receptor (CAR) T cell receptor (TCR)    product candidate that is in Phase I trial for the treatment of    relapsed/refractory multiple myeloma.  
    The company's gene therapy platform is based on viral vectors    that utilize a non-replicating version of the Human    Immunodeficiency Virus Type 1 (HIV-1). Its lentiviral vectors    are used to introduce a functional copy of a gene to the    patient's own isolated hematopoietic stem cells (HSCs) in the    case of its LentiGlobin and Lenti-D product candidates, or the    patient's own isolated white blood cells, which include T    cells, in the case of its bb2121 product candidate.  
    BLUE has a strategic collaboration with Celgene Corporation    (NASDAQ:CELG) to discover, develop, and    commercialize disease-altering gene therapies in oncology; with    Kite Pharma (KITE) to develop and commercialize    second generation T cell receptor product candidates against an    antigen related to certain cancers associated with the human    papilloma virus; and with Medigene (Germany) for the research    and development of (TCR) product candidates directed against    approximately four antigens for the treatment of cancer    indications. Founded in 1992 and headquartered in Cambridge,    Massachusetts, the company was formerly known as Genetix    Pharmaceuticals and later changed its name to bluebird bio    (Incorporated) in September 2010.  
    With its lentiviral-based gene therapies, T cell immunotherapy    expertise, and gene-editing capabilities, BLUE has built an    integrated product platform with broad potential application    for severe genetic diseases and cancer. BLUE's approach to gene    therapy is based on viral vectors that utilize the Human    Immunodeficiency Virus Type 1 or HIV-1. The HIV-1 vector is    stripped off all the components that allow it to self-replicate    and infect additional cells. HIV-1 is part of the lentivirus    family of viruses. The vectors are used to introduce a modified    copy of a gene from the patients own blood stem cells called    hematopoietic stem cells (HSC), which reside in the patient's    bone marrow. HSCs divide cells that allow for sustained    expression of the modified gene.  
    Lenti-D  
    bluebird is developing the Lenti-D product candidate to treat    patients with cerebral adrenoleukodystrophy.  
    Adrenoleukodystrophy is a rare X-linked, metabolic disorder    caused by mutations in the ABCD1 gene, which results in a    deficiency in adrenoleukodystrophy protein, or ALDP, and    subsequent accumulation of very long-chain fatty acids.    Symptoms of CALD usually occur in early childhood and progress    rapidly if untreated, leading to severe loss of neurological    function and eventual death.  
    Completed non-interventional retrospective study (the    ALD-101 Study)  
    CALD is a rare disease, and data on the natural history of the    disease, as well as the efficacy and safety profile of    allogeneic HSCT, is limited in scientific literature. To    properly design clinical studies of Lenti-D and interpret the    efficacy and safety results thereof, at the recommendation of    the FDA, bluebird performed a non-interventional retrospective    data collection study to assess the natural course of the    disease in CALD patients that were left untreated in comparison    with the efficacy and safety data obtained from patients that    received allogeneic HSCT.  
    For this study, data was collected from four US sites and one    French site on a total of 137 subjects, 72 of whom were    untreated, and 65 were treated with allogeneic HSCT.  
    Starbeam Study (ALD-102) - Phase II/III clinical study    in subjects with CALD  
    The company is currently conducting a Phase II/III clinical    study of Lenti-D product candidate in the US, referred to as    the Starbeam Study (ALD-102), to examine the safety and    efficacy of Lenti-D product candidate in subjects with CALD.    The study was fully enrolled in May 2015; however, in December    2016, the company amended the protocol for this study to enroll    up to an additional eight subjects in an effort to enable the    first manufacture of Lenti-D product candidate in Europe and    the subsequent treatment of subjects in Europe, and to bolster    the overall clinical data package for potential future    regulatory filings in the US and Europe. It intended to begin    treating the additional patients in early 2017.  
    The ALD-103 (observational) study  
    bluebird is also conducting the ALD-103 study, an observational    study of subjects with CALD treated by allogeneic HSCT. This    study is ongoing and is designed to collect efficacy and safety    outcomes data in subjects who have undergone allogeneic HSCT    over a period that is contemporary with the Starbeam study.  
    Lentiglobin Product  
    Transfusion-dependent -thalassemia (TDT)  
    -thalassemia is a rare hereditary blood disorder caused by a    mutation in the -globin gene, resulting in the production of    defective red blood cells, or RBCs. Genetic mutations cause the    absence or reduced production of beta chains of hemoglobin, or    -globin, preventing the proper formation of hemoglobin A,    which normally accounts for more than 95% of the hemoglobin in    the blood of adults.  
    Limitations of current treatment options  
    In geographies where treatment is available, patients with TDT    receive chronic blood transfusion regimens. These regimens    consist of regular infusions with units of packed RBC, or pRBC,    usually every three to five weeks, to maintain hemoglobin    levels and control symptoms of the disease.  
    The only potentially curative therapy for -thalassemia today    is allogeneic HSCT. However, complications of allogeneic HSCT    include risk of engraftment failure in unrelated    human-leukocyte-antigen, or HLA, matched patients, risk of    life-threatening infection, and risk of GVHD - a common    complication in which donor immune cells (white blood cells in    the graft) recognize the cells of the recipient (the host) as    foreign and attack them. As a result of these challenges,    allogeneic HSCT can lead to significantly high mortality rates,    particularly in patients treated with cells from a donor who is    not a matched sibling and in older patients. Overall, TDT    remains a devastating disease with an unmet medical need.  
    The Northstar Study (HGB-204)  Phase I/II clinical    study in subjects with TDT  
    The Northstar study is a single-dose, open-label,    non-randomized, multi-site Phase I/II clinical study in the US,    Australia, and Thailand to evaluate the safety and efficacy of    the LentiGlobin product candidate in increasing hemoglobin    production and eliminating or reducing transfusion dependence    following treatment. In March 2014, the first subject with TDT    was treated in this study, and, in May 2016, the study was    fully enrolled.  
    The study enrolled 18 adults and adolescents. To be eligible    for enrollment, subjects had to be between 12 and 35 years of    age, with a diagnosis of TDT, and received at least 100    mL/kg/year of pRBCs or more than or equal to eight transfusions    of pRBCs per year in each of the two years preceding    enrollment.  
    Efficacy will be evaluated primarily by the production of 2.0    g/dL of hemoglobin A containing A-T87Q-globin for the    six-month period between 18 and 24 months, post transplants.    Exploratory efficacy endpoints include RBC transfusion    requirements (measured in milliliters per kilogram) per month    and per year, post transplants.  
    The HGB-205 study  Phase I/II clinical study in    subjects with TDT or with severe SCD  
    bluebird is conducting the HGB-205 study, a Phase I/II clinical    study, in France to study the safety and efficacy of its    LentiGlobin product candidate in the treatment of subjects with    TDT and of subjects with severe SCD. In December 2013, the    company said that the first subject with TDT had been treated    in this study; in October 2014, bluebird declared that the    first subject with severe SCD had been treated in this study.    By February 2017, the study had been fully enrolled.  
    bluebird is conducting HGB-206 multi-site Phase I clinical    study in the US to evaluate the safety and efficacy of its    LentiGlobin product candidate for the treatment of subjects    with severe SCD. In October 2016, the company amended the    protocol of its HGB-206 study to expand enrollment and    incorporate several process changes, including updated drug    product manufacturing process. Enrollment had begun under this    amended protocol, and in February 2017, the company treated the    first subject under this amended protocol.  
    The Northstar-2 Study (HGB-207)  Phase III study in    subjects with TDT and a non-0/0 genotype  
    The Northstar-2 study is an ongoing single-dose, open-label,    non-randomized, international, multi-site Phase III clinical    study to evaluate the safety and efficacy of the LentiGlobin    product candidate to treat subjects with TDT and non-0/0    genotype. Approximately 23 subjects will be enrolled in the    study, consisting of at least 15 adolescent and adult subjects    between 12 and 50 years of age at enrollment and at least eight    pediatric subjects less than 12 years of age at enrollment. In    December 2016, the first subject had received treatment with    the LentiGlobin product candidate.  
    The planned Northstar-3 Study (HGB-212)  Phase III Study for    TDT in subjects with TDT and a 0/ 0 genotype  
    The company plans the initiation of HGB-212, a Phase III    clinical study of LentiGlobin in patients with TDT and the    0/0 genotype in 2H FY2017.  
    bluebird expects to enroll up to 15 adult, adolescent, and    pediatric subjects. The company anticipates that the primary    endpoint of the Northstar-3 study will be transfusion    reduction, which is defined as a demonstration of a reduction    in the volume of pRBC transfusion requirements in the    post-treatment time period of 12-24 months, compared with the    average annual transfusion requirement in the 24 months prior    to enrollment.  
    Sickle Cell Disease  
    SCD is an inherited disease that is caused by a mutation in the    -globin gene; this results in sickle-shaped red blood cells.    The disease is characterized by anemia, vaso-occlusive crisis,    infections, stroke, overall poor quality of life, and,    sometimes, early death. Where adequate medical care is    available, common treatments for patients with SCD largely    revolves around the management and prevention of acute sickling    episodes. Chronic management may include hydroxyurea and, in    certain cases, chronic transfusions. Given the limitations of    these treatments, there is no effective long-term treatment.    The only advanced therapy for SCD is allogeneic hematopoietic    stem cell transplantation (HSCT). Complications of allogeneic    HSCT include a significant risk of treatment-related mortality,    graft failure, graft-versus-host disease, and opportunistic    infections - particularly in patients who undergo    non-sibling-matched allogeneic HSCT.  
    In March 2017, bluebird announced the Publication of the Case    Study on the First Patient with Severe Sickle Cell Disease    Treated with Gene Therapy in The New England Journal of    Medicine. Patient 1204, a male patient with    S/S genotype, was enrolled in May 2014    at 13 years of age into the HGB-205 clinical study. The patient    underwent a regular transfusion regimen for four years prior to    this study. Over 15 months since transplant, no SCD-related    clinical events or hospitalizations occurred - contrasting    favorably with the period before the patient began regular    transfusions. All medications were discontinued, including pain    medication.  
    The successful outcome in Patient 1204 demonstrates the promise    of treatment with LentiGlobin gene therapy in patients with    severe SCD and serves as a guide to optimize outcomes in future    patients.  
    Celgene Collaboration  
    In March 2013, BLUE entered into a strategic collaboration with    Celgene to advance gene therapy in oncology (cancer), which was    amended and restated in June 2015, and amended again in    February 2016. The multi-year research and development    collaboration focused on applying BLUEs expertise in gene    therapy technology to CAR T cell-based therapies, to target and    destroy cancer cells. The collaboration now focuses exclusively    on anti- B-cell maturation antigen BCMA product candidates    for a new three-year term.  
    Under the terms of the Amended Collaboration Agreement, for up    to two product candidates selected for development under the    collaboration, BLUE is responsible for conducting and funding    all research and development activities performed up through    completion of the initial Phase I clinical study of such a    product candidate.  
    In February 2016, Celgene exercised its option to obtain an    exclusive worldwide license to develop and commercialize    bb2121, the first product candidate under the Amended    Collaboration Agreement, and paid the associated ($10 million)    option fee. BLUE will share equally in all costs related to    developing, commercializing, and manufacturing the product    candidate within the US, if it elects to co-develop and    co-promote bb2121 with Celgene. In case BLUE does not exercise    its option to co-develop and co-promote bb2121, it will receive    an additional fee (of $10 million).  
    Summary  
    All three names in my May 30, 2017, (45-page) report are from    the same space, and I highly recommend taking a look at the    entire report before making an investment decision. It is    available on request.  
    This industry is in its infancy - most trials are    only in Phase I or Phase II. The companies do not    have earnings yet, and that makes them difficult to value    today. In my opinion, the upside here is significant, but you    may have to hold on to these names for a few years in order to    realize that upside, because today an argument can be made that    the stocks have gotten a little bit ahead of themselves.  
    I am keeping my Buy recommendation on Juno (unchanged), and I    am keeping my Hold recommendation on Kite (unchanged). There    are currently seven institutions (each) with stakes of at least    250 million dollars in BLUE. There are nine institutions (each)    with stakes of at least 175 million dollars in KITE. With JUNO,    the institutional ownership is much lower - many institutions    probably got shaken out following deaths on the Juno trials    last year. In my opinion, the market over-reacted to those    deaths. In fact, the shares have already bounced significantly    since the low from last year following that market    over-reaction (and insiders bought $500,000 worth of Juno    shares recently).  
    I went in and out of KITE twice in the last couple of years and    locked in gains of 35% both times. I most recently exited KITE    at $87 a share on March 13.  
    The 52-week high on BLUE is $124, and the all-time high is    $194.  
    There are 8,000,000 shares short, and that is more than 10X the    average daily volume.  
    My recommendation is to allocate 3% portfolio weight to this    industry: 1.5% to BLUE, 0.75% to KITE, and 0.75% to JUNO.  
    I remember an analyst (many years ago) on CNBC defending his    Sell recommendation on Amazon (NASDAQ:AMZN). It was trading at $100/share at    the time. He defended the Sell rating by saying it loses money    on every book it sells. AMZN recently hit $1,000 today. The    lesson here is do not be afraid to invest in names with    multi-billion market caps that are without EPS today. With    KITE, BLUE, and JUNO, you must look out 3-5 years.  
    Sources  
    Why bluebird bio Stock Surged 20.7% Higher in    January  
    Risks - Mayo Clinic  
    bluebird bio Reports First Quarter 2017    Financial Results and Recent Operational Progress  
    bluebird bio Announces Publication of Case Study    on First Patient with Severe Sickle Cell Disease Treated with    Gene Therapy in The New England Journal of Medicine  
    Annual Report 10-K  
    Quarterly Report 10-Q  
    Press Release | Investor Relations | Bluebird    Bio  
    Kite Pharma Posts Q1 Loss, Reveals CAR-T Patient    Death  
    SHAREHOLDER ALERT: Bronstein, Gewirtz &    Grossman, LLC Announces Investigation of Kite Pharma, Inc.    (KITE)  
    KITE INVESTOR ALERT: Faruqi & Faruqi, LLP    Encourages Investors Who Suffered Losses Exceeding $100,000    Investing In Kite Pharma, Inc. To Contact The Firm  
    SHAREHOLDER ALERT: Levi & Korsinsky, LLP    Announces the Commencement of an Investigation Involving    Possible Securities Fraud Violations by the Board of Directors    of Kite Pharma, Inc.  
        Kite Investors See An Uncomfortable Parallel With Juno  
        Kite Pharma: History In The Making?  
        Kite Pharma: Still Time To Get In Ahead Of Lead Oncology    Treatment Approval  
    Here's What's Dragging Kite Pharma Inc. Down    Today -- The Motley Fool  
    Global Gene Therapy Market to Reach US$316    Million by 2015, According to a New Report by Global Industry    Analysts, Inc.  
    Gene Therapy Market information, Current Trends    Analysis, Major Players and Forecast 2024  
    Gene Therapies Market will generate $204m in    2020  
    Cancer Gene Therapy Market size to exceed $4.3bn    by 2024  
    Could gene therapy become biotech's growth    driver in 2017?  
    Cell Therapy 2016 - Year in Review (part 1)  
    Cancer Gene Therapy Market Size, Share, Industry    Report 2024  
    Gene Therapy Market information, Current Trends    Analysis, Major Players and Forecast 2024  
    Gene    Therapy Clinical Trials Worldwide  
    Human Gene Therapy (PDF)  
    Aranca Report - GENE THERAPY: Advanced Treatments for a    New Era  
    International Journal Of Pharma Sciences and Research    (IJPSR) - Gene therapy: Current status and future perspectives    Gene Therapy  Institute for Clinical and Economic    Review  
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Biotech Gene Therapy Names Juno, Kite, And bluebird bio Still Have Room To Run - Seeking Alpha